The 15 Best Malta Bay Cruises

1.St Paul’s Bay: Comino, Blue Lagoon, Gozo, & Caves Boat Tour

★★★★★★★★★★4.5 · 1,436 reviews · 5h 30m · from $29Our pick

Cruise from Bugibba on Mermaid Cruises to Comino’s Blue Lagoon, Gozo, Santa Maria Caves, and Elephant Rock. Expect English commentary, swimming stops, a two-hour Gozo visit, onboard drinks, and a smaller boat for $29, with snorkeling gear available to rent.

“The tour was super! The captain and his asssistant were very nice and approachable. And toward the end of the tour they gave us some pineapple. The drinks were very cheap so I would recommend to buy your drinks from the boat. I wish the Blue Lagoon stay was a bit longer 2hrs should be allotted for swimming in the Lagoon but overall, it was perfect! Thank you!❤️”

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2.Gozo Comino and Blue Lagoon Boat Tour with Swim Stop

★★★★★★★★★★4.5 · 445 reviews · 6.5 hours · from $33

Cruise from Mellieħa Bay past Malta’s sea caves and Comino’s coves, spend about three hours in Gozo, then swim from the boat at the Blue Lagoon. Optional Gozo bus and cave trips cost extra. Bring cash, swimwear, a towel, and sun protection.

“The Boat Trip was Brilliant The Blue Lagoon was Fantastic can't fault Anything Really”

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3.Marsamxett Harbour and Grand Harbour Cruise by Night

★★★★★★★★★★4.3 · 282 reviews · 1.5 hours · from $24

Cruise from Sliema Ferries at 20:30 through Marsamxett and Grand Harbours, passing the Yacht Marina, Valletta’s fortifications, the Three Cities, and ten creeks. An English commentary explains Malta’s port history while you enjoy the night views from a Maltese boat.

“It had been a nice experience to sail with thw relieving sea breeze through capital's ports and marina's. The explanations were easily nad clearly heard even by most of us who remained outside on the deck. The only problem was that afterwards there was no shuttle serice for us staying in Valetta. After a phone call, however, this was solved after some time.”

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4.Comino Blue Lagoon & Crystal Lagoon – 3 Bay Cruise

★★★★★★★★★★4.9 · 249 reviews · 6 hours · from $47

Join Bluewaves Watersports for a six-hour cruise from Marfa Bay to Crystal Lagoon, Blue Lagoon, and Ħalfa Rock. You get four hours in the water, space for just 45 people, a toilet, fresh-water shower, and an onboard bar. Crew members including Danny and Ali help with swimming stops and sightseeing.

“We enjoyed everything. As mentioned in the comments and the tour description, the boat wasn’t overcrowded, which allowed all guests to move around and relax comfortably. We chose to stay on the boat instead of going ashore at the Blue Lagoon — and we didn’t regret it. At each swimming stop, we went snorkeling. While the spots weren’t teeming with fish, we still managed to see some — even a moray eel! The crew was very friendly, and the €5 Aperol Spritz was delicious. Highly recommended!”

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5.Valletta & Three Cities Harbour Cruise

★★★★★★★★★★4.0 · 239 reviews · 1 hour 30 minutes (approx.) · from $23Best value

Start at Sliema Ferry for a 90-minute harbour cruise past Fort Manoel, Valletta, Fort St. Elmo, Fort St. Angelo, and the Three Cities. You can try to stop at Esplora Science Centre, then return by boat or hop-on hop-off bus. English is offered, and admission to Esplora costs extra.

“It was beautiful, my first boat cruise. Staff was really nice and helpful. The tour guides gave detailed explanations.”

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6.From Mellieha: Three Bay Cruise including the Blue Lagoon

★★★★★★★★★★4.9 · 225 reviews · 6 hours · from $47

Set sail from Marfa Bay on the Pegasus for a six-hour cruise to Comino’s Blue and Crystal Lagoons and Gozo’s Halfa Rock Bay. Crew members such as Danny and Ali share local details, while you choose between swimming, snorkeling, sunbathing, or staying aboard.

“The stuff and the captain are so so nice, very nice people and perfect service. All good!”

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7.The Traditional Harbour Cruise

★★★★★★★★★★4.0 · 159 reviews · 1 hour 30 minutes (approx.) · from $24

You’ll cruise from Sliema around Valletta and the Three Cities, seeing forts, battlements, dockyards, marinas, and ten historic creeks from the water. English commentary explains Malta’s story, while a bar and toilets add comfort. Hotel pickup may be available, but confirm the exact meeting point and boat.

“Just about the right length at 90 minutes. Any longer in my experience induces lethargy. Crew was pleasant and came round to take orders for drinks. Clear oration in the audio guide that played through the tannoys”

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8.St. Paul’s Bay: Half-Day Scenic Catamaran Tour with Drinks

★★★★★★★★★★4.8 · 157 reviews · 3 - 4 hours · from $59

From Fekruna Jetty, sail with up to 20 people to Santa Maria Caves, Blue Lagoon, and Crystal Lagoon. Crew members such as Bim, Idola, Dustin, and Fernando have been praised for friendly service. Beer, wine, soft drinks, snorkel masks, and shared SUP boards are included.

“Really great trip. Worth the little extra you pay instead of the boats with lots of people. Credit to the crew.”

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9.Valletta Harbour Cruise

★★★★★★★★★★4.5 · 129 reviews · 1 hour 15 minutes (approx.) · from $24

Board Luzzu Cruises at Sliema Ferry 4 for an approximately 1-hour-15-minute harbour cruise. You’ll pass Valletta’s walls, Fort St Elmo, the Three Cities, and Fort St Angelo while hearing about Malta’s major sieges. The boat holds up to 70 people and returns to Sliema.

“A spectacular boat trip, impressive city!! Good value for money. Loads of space, left on time. The commentary was informative, so much history.”

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10.St. Paul’s Bay: Gozo, Comino & St. Paul’s Bus & Boat Tour

★★★★★★★★★★4.5 · 114 reviews · from $40

Spend seven hours on a small boat from Bugibba with live English commentary, a one-hour swim at Comino’s Blue Lagoon, two hours in Gozo’s Victoria, and a 30-minute stop at St. Paul’s Island. Captain Matthew and his crew help keep the day moving, with cave visits included when sea conditions allow.

“Had a fantastic time but to Gozo part of the trip needed to be longer”

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11.Sliema: Three Bay Cruise with Lunch & Optional Transfers

★★★★★★★★★★4.4 · 109 reviews · 8 hours · from $77

Sail Malta’s northeast coast aboard the wooden Turkish gulet Hera, stopping at St. Paul’s Bay, Daħlet Qorrot Bay, and Comino’s Blue Lagoon. You’ll get a cold buffet, unlimited soft drinks, beer and wine with lunch, swim ladders, showers, shade, and optional hotel transfers.

“Super croisière, équipage sympa et le rapport qualité/prix est top!”

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12.Sliema: Special Night Harbour Cruise

★★★★★★★★★★4.3 · 41 reviews · 1.5 hours · from $24

Cruise from Sliema Ferries at 6:00 PM through Marsamxett and the Grand Harbour, with English commentary, views of Valletta and the Three Cities, and time to bring your own food or drinks.

“The boat ride was lovely because there were only 10 of us on board as opposed to the usual 50+. The tour however was read to us however by the vost drivers phone (AI/Computer). When It was run by Supreme tours, the boat driver was the guide and much more informative. For £17 however, its a great 1.5 hours to sit, have a few drinks, take pictures and juat relax. I would recommend it, yes.”

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13.From Mellieha Bay Malta : Blue Lagoon Sunset Cruise

★★★★★★★★★★4.7 · 29 reviews · 1 day · from $29

Board the Melina Turkish Gullet or English Rose at Mellieha Bay for a late-day cruise to Comino. You get 90 minutes to swim and snorkel at the Blue Lagoon, then sail around the island for sunset with complimentary prosecco, music, and a freshwater shower.

“great boat trip! wasn't nearly as busy as the other boats seemed to be (think because we went direct from Mellieha which is a quieter area rather than being bussed into a large resort to catch a boat). the staff from Oh Yeah! were friendly and ensured we all had or glasses of prosecco in hand just in time for the gorgeous sunset! it was a perfect time to go to the blue lagoon as it was beginning to quieten down but be aware the ground is very rocky when you come off the boat! would definitely recommend this trip!”

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14.3 Bay Cruise to Selmun Bay, Blue Lagoon and Gozo

★★★★★★★★★★4.8 · 22 reviews · 8 hours · from $59

Settle aboard a traditional Turkish gulet for an eight-hour cruise from Sliema. You get three swim stops, snorkel gear, two paddleboards, and a small group of about 20 to 23 people. English, Serbian, and Indonesian are spoken on board. Food and drinks cost extra.

“Dit was eigenlijk precies zoals we het ons hadden voorgesteld. 8 uur op het water op een niet al te grote boot, met een beperkt aantal mensen (23 incl. schippers), voldoende zit- en ligplaatsen en 3 zwemmomenten (4 uur bij elkaar). Er was een relaxte sfeer aan boord. Je kon ook drankjes kopen tegen een redelijke prijs. We hadden wel wat stress om op tijd te zijn vanwege het zoeken naar een parkeerplaats. Er is een parkeergarage vlakbij. Daarna konden we de boot niet direct vinden. Het bllek dat je even een trapje van de kade af moet gaan om op te kunnen stappen. Het was eind september, met lichte…”

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15.Mellieha: Two Bay Evening Cruise Including The Blue Lagoon

★★★★★★★★★★4.9 · 22 reviews · 3 hours · from $35

From Marfa Bay, you cruise to Comino’s Crystal Lagoon and Blue Lagoon for about an hour at each stop. Expect a smaller boat, English-speaking crew, toilets, a shower, onboard drinks for purchase, and calmer evening conditions. Bring a towel, sunscreen, cash, and your Blue Lagoon access pass if you plan to go ashore.

“Géniale , des baignades dans des endroits magiques aux eaux cristallines, un timing parfait permettant de bien en profiter . Mais surtout nous n’étions qu’une vingtaine de passager, essentiellement des familles , donc très calme et pas entassés comme des sardines contrairement aux autres gros catamaran etc.. Deux guides à votre service et qui vous commentent la croisière . Bref au top”

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